Index

_

__weakref__ (wsuconnect.support_tools.fsreconall_stage1_wf.InvalidJsonInput attribute) (wsuconnect.support_tools.fsreconall_stage2_wf.InvalidJsonInput attribute)

A

add_extension() (in module wsuconnect.support_tools.dti_preprocess_wf)

applytransforms() (in module wsuconnect.support_tools.dti_flirt)

B

built-in function read_credentials()

C

c3d_affine_tool() (in module wsuconnect.support_tools.dti_flirt) convert_dicoms() (in module wsuconnect.support_tools.convert_dicoms) copy_dirs() (in module wsuconnect.support_tools.copy_dirs) create_bin_condor_job() (in module wsuconnect.support_tools.condor)

create_freesurfer_condor_job() (in module wsuconnect.support_tools.condor) create_fsl_condor_job() (in module wsuconnect.support_tools.condor) create_mysql_connection() (in module wsuconnect.support_tools.mysql) create_python_condor_job() (in module wsuconnect.support_tools.condor) create_python_venv_condor_job() (in module wsuconnect.support_tools.condor)

D

do_antspynet_bet() (in module wsuconnect.support_tools.flirt) DoDelete() (in module wsuconnect.support_tools.RestToolbox) DoGet() (in module wsuconnect.support_tools.RestToolbox) DoPost() (in module wsuconnect.support_tools.RestToolbox)

DoPut() (in module wsuconnect.support_tools.RestToolbox) dti_flirt() (in module wsuconnect.support_tools.dti_flirt) dti_preprocess() (in module wsuconnect.support_tools.dti_preprocess_wf) DTIFitOutputSpecPatched (class in wsuconnect.support_tools.dti_preprocess_wf) DTIFitPatched (class in wsuconnect.support_tools.dti_preprocess_wf)

E

EddyOutputSpecPatched (class in wsuconnect.support_tools.dti_preprocess_wf) EddyOutputSpecPatched.TraitedSpec (class in wsuconnect.support_tools.dti_preprocess_wf)

EddyPatched (class in wsuconnect.support_tools.dti_preprocess_wf) evaluate_source_file_transfer() (in module wsuconnect.support_tools.evaluate_source_file_transfer)

F

feat_full_firstlevel() (in module wsuconnect.support_tools.feat_full_firstlevel) flirt() (in module wsuconnect.support_tools.flirt)

flirt_pngappend() (in module wsuconnect.support_tools.flirt_pngappend) fsreconall_stage1() (in module wsuconnect.support_tools.fsreconall_stage1_wf) fsreconall_stage2() (in module wsuconnect.support_tools.fsreconall_stage2_wf)

G

get_basename() (in module wsuconnect.support_tools.dti_preprocess_wf) get_bids_filename() (in module wsuconnect.support_tools.bids)

get_bids_labels() (in module wsuconnect.support_tools.bids) get_total_vols() (in module wsuconnect.support_tools.flirt)

I

InvalidJsonInput, [1]

M

mask_to_nii() (in module wsuconnect.support_tools.fsreconall_stage1_wf) merge() (in module wsuconnect.support_tools.dti_preprocess_wf) module wsuconnect.support_tools.bids wsuconnect.support_tools.condor wsuconnect.support_tools.convert_dicoms wsuconnect.support_tools.copy_dirs wsuconnect.support_tools.dti_flirt wsuconnect.support_tools.dti_preprocess_wf wsuconnect.support_tools.evaluate_source_file_transfer wsuconnect.support_tools.feat_full_firstlevel wsuconnect.support_tools.flirt wsuconnect.support_tools.flirt_pngappend wsuconnect.support_tools.fsreconall_stage1_wf wsuconnect.support_tools.fsreconall_stage2_wf wsuconnect.support_tools.mysql wsuconnect.support_tools.prepare_examcard_html wsuconnect.support_tools.remove_dirs wsuconnect.support_tools.RestToolbox

O

output_spec (wsuconnect.support_tools.dti_preprocess_wf.DTIFitPatched attribute) (wsuconnect.support_tools.dti_preprocess_wf.EddyPatched attribute)

P

pngappend() (in module wsuconnect.support_tools.dti_flirt)

prepare_examcard_html() (in module wsuconnect.support_tools.prepare_examcard_html)

Q

query_file() (in module wsuconnect.support_tools.mysql)

query_source_file() (in module wsuconnect.support_tools.mysql)

R

read_credentials() built-in function

remove_dirs() (in module wsuconnect.support_tools.remove_dirs)

S

sql_check_table_exists() (in module wsuconnect.support_tools.mysql) sql_create_project_tables() (in module wsuconnect.support_tools.mysql) sql_mri_tracking_insert() (in module wsuconnect.support_tools.mysql) sql_mri_tracking_query() (in module wsuconnect.support_tools.mysql) sql_mri_tracking_set() (in module wsuconnect.support_tools.mysql)

sql_multiple_query() (in module wsuconnect.support_tools.mysql) sql_query() (in module wsuconnect.support_tools.mysql) sql_query_dir_check() (in module wsuconnect.support_tools.mysql) sql_query_dirs() (in module wsuconnect.support_tools.mysql) sql_table_insert() (in module wsuconnect.support_tools.mysql) sql_table_remove() (in module wsuconnect.support_tools.mysql)

W

wsuconnect.support_tools.bids module wsuconnect.support_tools.condor module wsuconnect.support_tools.convert_dicoms module wsuconnect.support_tools.copy_dirs module wsuconnect.support_tools.dti_flirt module wsuconnect.support_tools.dti_preprocess_wf module wsuconnect.support_tools.evaluate_source_file_transfer module wsuconnect.support_tools.feat_full_firstlevel module

wsuconnect.support_tools.flirt module wsuconnect.support_tools.flirt_pngappend module wsuconnect.support_tools.fsreconall_stage1_wf module wsuconnect.support_tools.fsreconall_stage2_wf module wsuconnect.support_tools.mysql module wsuconnect.support_tools.prepare_examcard_html module wsuconnect.support_tools.remove_dirs module wsuconnect.support_tools.RestToolbox module